Chip seq atlas
WebFor ChIP, antibodies were used to detect ERα (sc-543, Santa Cruz), AR (sc-816, Santa Cruz), FOXA1 (sc-6554, Santa Cruz), PR (sc-7208, Santa Cruz), GR (12041S lot 3, Cell … WebChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Yang JH, Li JH, Jiang S, Zhou H and Qu LH*. Nucleic Acids Res. 2013 Jan;41:D177-87.Epub 2012 Nov 17. Release notes. Release version 2.2.0 (2016-07-21) Updated gene annotation sets of human and mouse.
Chip seq atlas
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WebChIP-Atlas collects all ChIP-seq and DNase-seq data archived in NCBI SRA, with samples derived not only from human and mouse, which are also covered in other existing databases (ReMap, Cistrome DB ... WebOct 3, 2016 · ChiLin is a scalable and powerful tool to process large batches of ChIP-seq and DNase-seq datasets. The analysis output and quality metrics have been structured into user-friendly directories and reports. We have successfully compiled 23,677 profiles into a comprehensive quality atlas with fine clas …
WebChIP-Atlas is a database collecting the bed files calculated from the ChIP-Seq, DNase-Seq, ATAC-Seq, and Bisulfite-seq data archived in Sequence Read Archive (SRA). The database has a web interface to explore the analysis results from the calculated peak call data. WebThrough collaborations, Dr. Dozmorov analyses and interprets next-generation sequencing data, ranging from RNA-seq, ChIP-seq, DNA methylation to whole exome/genome sequencing datasets and single ...
WebJan 24, 2024 · Therefore, identification of key TFs is critical for understanding drug MoAs. To this end, we combined chemically induced DEGs from CTD (Additional file 2: Table S1) and large-scale public ChIP-seq data (n = 13,558) from ChIP-Atlas (Fig. 1, Additional file 2: Table S2). We then performed ChIP-seq-based enrichment analysis (ChIPEA, detailed in ... WebSearch for data by keywords. Simple search. Detailed search. Show entries. Showing 0 to 0 of 0 entries. TSV. SRX ID. SRA ID. GEO ID.
WebChIP-Atlas is powered by comprehensively integrating all data sets from high-throughput ChIP-seq and DNase-seq, a method for profiling chromatin regions accessible to …
irs 8948 instructionsWebOct 29, 2024 · The current implementation of Aging Atlas includes five modules: transcriptomics (RNA-seq), single-cell transcriptomics (scRNA-seq), epigenomics (ChIP-seq), proteomics (protein–protein interaction), and pharmacogenomics (geroprotective compounds), which will be expanded according to the needs of aging research and the … irs 8915-f release dateWebChIP-Seq: ChIPed DNA was processed using Takara SMRTer ThruPLEX DNA-seq Kit. Briefly, DNA was end-repaired and ligated to stem-loop adaptors. Then DNA was PCR amplified with Illumina-compatible primers for 7-11 cycles and library fragments of 200 to 400 bp were selected using Ampure XP beads. portable heated coffee mugWebOct 29, 2024 · Additionally, we introduce a catalog of 33 Arabidopsis histone modifications and variants across 4.5M peaks from the integration of 286 ChIP-seq datasets. The … irs 8915-f formWebJul 29, 2024 · The complete ChIP–seq data series includes more than 66 billion sequencing reads from 564 ChIP–seq experiments, each consisting of two biological … portable heater crossword cluehttp://chip-atlas.org/view?id=SRX12379761 portable heater as seen on tvWebOct 4, 2024 · An integrative, comprehensive database to explore public Epigenetic dataset, including ChIP-Seq, DNase-Seq, ATAC-Seq, and Bisulfite-Seq data: ChIP-Atlas covers … Visualize all peaks of the public ChIP-Seq data on IGV. Toggle navigation ChIP … ChIP-Atlas: Target Genes Predict target genes bound by given transcription … ChIP-Atlas: Colocalization Predict partner proteins colocalizing with given … Perform enrichment analysis based on the public ChIP-Seq peak call results. … To cite ChIP-Atlas in your publication: Paper Zou, Z., Ohta, T., Miura, F., Oki, … Search ChIP-Atlas dataset by keywords. Toggle navigation ChIP-Atlas Peak … ChIP-Seq: ChIPed DNA was processed using Takara SMRTer ThruPLEX DNA … ChIP-Seq: ChIPed DNA was processed using Takara SMRTer ThruPLEX DNA … library_strategy ChIP-Seq library_source GENOMIC library_selection ChIP … Sample information curated by ChIP-Atlas Antigen Antigen Class TFs and others … portable heater best offer